Thanks everyone for the responses.
I'll try and address some of the points raised.
I would love to give you all the proper hand history however this hand was played on a mobile phone which does not record them. It was in the middle of my 'lunchtime session' so whilst I remember some of the details I don't want to invent the ones I don't remember for fear of confusing things.
I have no real reads on villain. Without any sort of HUD on the mobile I have nothing but what I saw to go on which was not enough to draw any meaningful conclusions.
These cards will not be correct, for reasons stated above, but I'm sure there wasn't a straight he could have. So after the river we have something like this:
My holding 9
9
Board: 9
5
10
2
My reasoning for outs was:
The 9
The 5
The 10
The 2
I discount the 5
reasoning that if he holds 2
cards there is a reasonable chance he already has it and I can't draw it. Of course he might not but I figured reducing the outs was being cautious. This may be a mistake as we never worry about folded cards in the calculations.
Again don't take the cards I've quoted as what was actually there because there is no way I've got it totally correct from memory.
In the absence of other information I've found that in these micro stakes 1c/2c people on the whole tend to love flushes and when they bet them they almost always have them. Again it's not very scientific just based on me losing a lot of hands thinking 'you don't have it...... oh, you do'. Again I was being cautious reasoning that I wanted to figure out how good a position I was in to beat a nut flush and not how good a position I was in beating a flush or a better set, 2 pair, top pair or a bluff.
I'm going to see if I can get at the proper hand history later when I get back to a pc.
One of the things I'm finding hardest to do as a beginner is to try and collect and process all of the information that you guys pick up in the limited time you get to act. I guess it's like anything else. At first it's all too much to do but as you get better it becomes second nature.
I do appreciate the responses though.