You could just set a timer in your own script to run SK every so often.
Code:
#Persistent
SetTimer, GOGOSK, 10000
return
GOGOSK:
run E:\Autohotkey\SeriousKeys.ahk
return
Also I am still waiting on someone to confirm whether of not removing the second click fixed the double folds while stacking issue.
The licensing check only runs every 5 minutes so it's not really a big deal.