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Oh interesting.. Can you elaborate on why that is? Would you recommend running sims without rake for this reason then?
First, as to your example, we can't verify anything from screenshot. We will need the tree config which you can get by clicking "copy to clipboard" button and pasting it here or to email.
It's likely you have made a mistake somewhere but of course we will verify it.
As to zero-sum thing. Non zero-sum games have the following properties:
-there is usually more than one solution
-those solutions can have different EVs
This means, that unlike in zero-sum games, the one true solution doesn't exist. There is absolutely nothing the solver can do about it as it's immovable mathematical property of non-zero sum games. Sure, we can find one equilibrium but:
-it might a different one every time you run the solver
-it might be a different one depending on where you start (so having more betting options for example means it starts from a different point and might converge to a different solution).
That being said the differences in EV in your solutions are quite big which suggests there is a mistake somewhere (the trees are not the same). To verify that we will need the tree config as on the screenshot not everything is visible in enough detail.