Please update to the latest version, Build 4.
Download and install PT3.
Are you running both PT3 and Full Tilt as Administrator? This is different to being logged in as an Administrator.
ATTENTION: Windows VISTA users, you must read this...
If you turn Auto Center of in both PT3 and FTP, are the stats lined up correctly?
If not, right click drag them to the correct places and then PT-icon -> Save Layout.
When you open another table after this the stats should be correct?
Then try re-enabling auto center in both.