With a gap on the five point, and checkers on the six, there will be wastage anytime you roll a five. A man will move down from the six point to the one point, and be borne off later with a number that averages between 3 and 4.
With a gap on the four point, and checkers on both the five and six, there will be even more wastage. Anytime you roll a four, it will be used to play down to the two or one point from either the five or six, and later, as above, those checkers will be borne off with a number that averages between 3 and 4. Hence the need to give more weight to a gap on the four point than a gap on the five. This presumes, of course, that there will more checkers on the five and six points combined in this second example than there were on the six point alone in the first example.
Incidentally, Tom Keith has
a great discussion of the Lamford pip count formula, along with his own and others, on his web site Backgammon Galore! He doesn't think it's the best.